| Sequenced cultivar : | Charmono |
|---|---|
| Genome size : | 365Mbp |
| BUSCO score : | NC |
| Long Read Sequencing (PacBio) | |
| Number of contigs : | 236 |
| N50 : | 6.8Mb |
| + Hybrid scaffolding (Optical mapping) | |
| Number of scaffolds | 43 |
| N50 | 12.3Mbp |
| Total number of genes : | 33 936 |
|---|---|
| Number of protein coding genes : | 31 348 |
| Number of non protein coding genes : | 2 588 |
| UTR | |
| Percent genes with five UTR : | 70% |
| Percent genes with three UTR : | 71% |
| BUSCO score : | 96.1 % |
The C.Melo genome data contained in this site are made available by the Institute of Plant Science of Saclay and the Laboratory of Genomics and Biotechnology of the Fruits (GBF) ahead of publication for non-commercial purposes only. IPS2 reserves the priority to use these data for genome level analyses. By using these data, you agree not to use them for the publication of such genome level analyses without the written consent of IPS2.
If you you have questions regarding the ressources, you can address them to Abdelhafid Bendahmane.
We thank :
- The Melo genome assembly was performed by the @GBF bioinformatics team
- The structural annotation was produced by : @GBF bioinformatics team & @IPS2
- The functionnal annotation was produced by : @IPS2
- @Gentyane and @Get-PlaGe for respectively the PacBio and Chromium 10x sequencing,
- the genotoul bioinformatics platform Toulouse Midi-Pyrenees @Bioinfo Genotoul for providing computing and storage resources.